Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LUAD | rs140503890 | chr17:47410521 | G/A | 3.07E-11 | 502 | 21.82 | 21.82 | 4.55 | KM Plot |
| LUAD | rs140670503 | chr17:47433192 | G/A | 5.17E-11 | 503 | 21.92 | 18 | 4.55 | KM Plot |
| LUAD | rs140876801 | chr2:10928667 | A/G | 6.95E-13 | 503 | 20.8 | 31.73 | 1.27 | KM Plot |
| LUAD | rs142415707 | chr17:47445346 | G/A | 5.39E-11 | 503 | 21.93 | 19.15 | 4.55 | KM Plot |
| LUAD | rs142777023 | chr17:45831038 | C/T | 8.97E-7 | 504 | 21.88 | 20.87 | 3.97 | KM Plot |
| LUAD | rs143358827 | chr17:45848070 | G/T | 1.02E-6 | 504 | 21.87 | 21.4 | 3.97 | KM Plot |
| LUAD | rs143588342 | chr17:45855726 | G/A | 7.87E-7 | 505 | 21.87 | 20.87 | 3.97 | KM Plot |
| LUAD | rs144202373 | chr17:47421779 | AG/A | 3.01E-11 | 502 | 21.77 | 21.7 | 4.55 | KM Plot |
| LUAD | rs146060597 | chr17:47457977 | C/CTATT | 1.94E-7 | 499 | 21.73 | 22.33 | 4.63 | KM Plot |
| LUAD | rs146101176 | chr11:62636912 | C/T | 3.13E-5 | 503 | 21.82 | 21.77 | 7.7 | KM Plot |
| LUAD | rs146342421 | chr12:9552027 | A/G | 0 | 495 | 22.03 | 20.87 | 0.32 | KM Plot |
| LUAD | rs147125686 | chr17:47348066 | G/A | 6.29E-11 | 500 | 21.93 | 20.3 | 4.55 | KM Plot |
| LUAD | rs147341998 | chr7:98940407 | G/A | 1.34E-6 | 504 | 21.07 | 26.37 | 9.7 | KM Plot |
| LUAD | rs148171854 | chr17:47382795 | C/T | 5.65E-11 | 502 | 21.93 | 20.3 | 4.55 | KM Plot |
| LUAD | rs148298271 | chr17:47367751 | GCA/G | 4.01E-11 | 497 | 21.88 | 21.93 | 4.55 | KM Plot |